Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs7662389 chr4:99019892 G/A 0.00016 118 38.83 35.4 58.7 KM Plot
THYM rs7668133 chr4:143385116 G/A 0.000149 119 38.33 48 18.42 KM Plot
THYM rs76684393 chr4:70233655 C/G 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs766880 chr2:30748733 G/T 1.38E-8 119 35.67 51.83 33.13 KM Plot
THYM rs76707983 chr4:70059741 G/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs76708321 chr2:10951118 T/A 0.000197 119 41.77 38.58 62.72 KM Plot
THYM rs76735151 chr11:20026419 G/A 3.64E-6 117 42.82 27.1 13.75 KM Plot
THYM rs767541 chr12:5101362 G/A 1.23E-6 118 11.58 35.67 46.27 KM Plot
THYM rs7676667 chr4:126119096 A/C 0.000121 116 38.33 34.93 42.9 KM Plot
THYM rs7682460 chr4:70059746 T/C 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs76873130 chr5:149879332 G/A 1.5E-8 118 41.22 35.13 12.63 KM Plot
THYM rs76905380 chr4:70067938 A/C 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs76907998 chr4:70291741 C/T 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs76922771 chr2:30718186 C/A 1.25E-8 119 38.23 50.07 33.13 KM Plot
THYM rs76957516 chr6:85128564 T/G 0.000199 118 36.4 49.75 53.63 KM Plot